Summary

This page is a summary of the content in the Biolookup.

Prefix Name Example Names Alts Definitions Species Synonyms Xrefs Relations
aeo Anatomical Entity Ontology 0001017 132 128 132 0 6 0 234
aero Adverse Event Reporting Ontology 0000125 134 0 37 0 0 0 167
agro Agronomy Ontology 00020007 771 1 763 0 419 0 1,214
aism Ontology for the Anatomy of the Insect SkeletoMuscular system 0000027 537 0 537 0 45 0 1,710
amphx The Amphioxus Development and Anatomy Ontology 1000160 399 0 35 0 25 79 1,758
antibodyregistry Antibody Registry 493771 1,898,449 0 0 0 0 441,416 0
apo Ascomycete phenotype ontology 0000184 309 244 273 0 47 0 306
aro Antibiotic Resistance Ontology 1000001 6,487 0 6,487 0 1,216 395 10,624
bcgo Beta Cell Genomics Ontology 429 0 408 0 0 0 467
bfo Basic Formal Ontology 0000001 35 0 8 0 0 0 34
bspo Biological Spatial Ontology 0000029 139 0 107 0 121 83 259
bto BRENDA tissue / enzyme source 0000590 6,511 3 5,460 0 6,169 0 7,646
ccle Cancer Cell Line Encyclopedia Cells BT20_BREAST 1,061 0 0 0 0 2,081 0
cco Cell Cycle Ontology 0000003 3 0 3 0 0 0 6
cdao Comparative Data Analysis Ontology 0000072 131 0 0 0 0 0 153
cdno Compositional Dietary Nutrition Ontology 0000013 759 0 759 0 681 0 865
cellosaurus Cellosaurus 0440 130,952 0 0 0 93,693 610,683 68,744
ceph Cephalopod Ontology 0000109 321 0 244 0 89 1 553
cgnc Chicken Gene Nomenclature Consortium 10087 27,040 0 0 27,039 28,098 40,807 27,040
chebi Chemical Entities of Biological Interest 24867 161,715 18,515 51,922 0 340,861 234,035 322,738
chmo Chemical Methods Ontology 0002902 2,908 98 2,871 0 9,324 52 3,287
cio Confidence Information Ontology 0000040 44 0 44 0 3 0 82
cl Cell Ontology 0000062 2,493 76 2,129 0 2,615 1,610 6,966
clao Collembola Anatomy Ontology 0000088 1,495 0 1,493 0 875 397 2,670
clo Cell Line Ontology 0000091 39,080 0 0 0 0 0 0
clyh Clytia hemisphaerica Development and Anatomy Ontology 1000100 257 0 211 0 18 0 760
cmo Clinical measurement ontology 0001350 3,025 0 0 0 0 0 3,717
cmpo Cellular Microscopy Phenotype Ontology 0000435 399 0 391 0 259 11 527
cob Core Ontology for Biology and Biomedicine 0000080 15 0 5 0 0 0 23
colao Coleoptera Anatomy Ontology 0000000 44 0 43 0 11 0 88
complexportal Complex Portal CPX-263 3,644 0 3,644 3,644 9,966 6,942 17,939
conso Curation of Neurodegeneration Supporting Ontology CONSO00010 368 0 368 0 1,372 0 0
cro Contributor Role Ontology 0000038 81 0 78 0 0 0 80
cryoem Cryo Electron Microscopy ontology 0000052 111 0 77 0 0 0 110
cteno Ctenophore Ontology 0000047 151 0 16 0 13 0 298
cvdo Cardiovascular Disease Ontology 0000546 290 0 10 0 10 0 180
dc Dublin Core contributor 202 0 0 0 0 92 201
ddanat Dictyostelium discoideum anatomy 0000006 130 4 130 0 112 4 350
ddpheno Dictyostelium discoideum phenotype ontology 0001417 961 111 961 0 788 4 1,161
depmap DepMap Cell Lines ACH-000001 1,814 0 0 0 1,929 2,658 0
dermo Human Dermatological Disease Ontology 0000000 3,401 0 169 0 0 3,679 3,817
dictybase dictyBase DDB0191090 14,222 0 0 14,222 15,425 0 14,880
disdriv Disease Drivers Ontology 0000000 7 0 4 0 0 0 6
diseaseclass Disease Class 0000598 202 0 0 0 0 92 201
doid Human Disease Ontology 0110974 11,003 1,429 8,547 0 18,729 37,223 15,193
dron The Drug Ontology 00023232 637,621 0 70 0 0 0 638,436
drugbank DrugBank DB14938 14,594 0 8,556 0 217,836 84,937 2,578
drugcentral Drug Central 307 4,098 0 0 0 0 8,194 0
duo Data Use Ontology 0000046 37 0 37 0 0 0 37
ecao The Echinoderm Anatomy and Development Ontology 0107180 465 0 125 0 256 83 1,746
eco Evidence ontology 0007807 1,941 46 1,941 0 959 66 3,295
ecocore An ontology of core ecological entities 00000001 182 0 181 0 72 0 237
ecto Environmental conditions, treatments and exposures ontology 0000001 2,540 0 2,540 0 2,540 0 6,549
efo Experimental Factor Ontology 0005147 11,461 0 10,309 0 0 26,308 20,515
ehda Human developmental anatomy, timed version 1 8,340 0 0 0 7 0 8,339
ehdaa2 Human developmental anatomy, abstract 0000000 2,456 0 0 0 1 0 8,072
emap Mouse gross anatomy and development, timed 1 19,444 0 0 0 0 0 21,721
envo Environment Ontology 09200010 3,360 41 3,059 0 3,134 1,946 5,664
epo Epidemiology Ontology 119 0 118 0 0 0 137
exo Exposure ontology 0000078 150 1 147 0 95 0 174
fao Fungal gross anatomy 0000001 112 1 112 0 41 33 151
fbbt Drosophila gross anatomy 00007294 17,570 272 17,253 0 29,177 10,216 96,989
fbcv FlyBase Controlled Vocabulary 0000586 1,132 2 1,126 0 518 60 1,509
fbdv Drosophila development 00000000 200 5 194 0 79 7 621
fbsp Fly taxonomy 00000000 6,583 14 0 0 3,143 2,166 6,584
fix Physico-chemical methods and properties 0000390 1,163 0 0 0 623 0 1,684
flopo Flora Phenotype Ontology 0005250 23,226 0 6 0 59 0 344
flybase FlyBase Gene FBgn0011293 17,907 0 17,894 17,894 24,259 0 71,035
fma Foundational Model of Anatomy 63189 78,977 0 1,118 0 45,996 0 121,708
fobi Food-Biomarker Ontology 030719 763 0 0 0 0 0 3,597
fovt FuTRES Ontology of Vertebrate Traits 0000009 313 0 307 0 344 0 576
fypo Fission Yeast Phenotype Ontology 0001707 7,646 111 7,643 0 28,281 4 10,915
gecko Genomics Cohorts Knowledge Ontology 0000044 67 0 67 0 0 0 71
geno Genotype Ontology 0000632 221 0 170 0 0 3 303
gno Glycan Naming and Subsumption Ontology 10004892 104,602 0 104,602 0 6,530 0 125,116
go Gene Ontology 0032571 43,613 3,425 43,613 0 118,193 24,625 88,901
goche GO Chemicals 25512 75 0 0 0 0 0 78
gro Gene Regulation Ontology 2 0 0 0 0 0 0
gsso Gender, Sex, and Sexual Orientation Ontology 002368 9,378 0 9,350 0 4,798 0 10,172
hao Hymenoptera Anatomy Ontology 0000187 2,465 0 2,465 0 2,557 62 4,844
hgnc HUGO Gene Nomenclature Committee 16793 43,177 0 43,155 43,155 86,383 268,615 191,766
hog Homologous Organ Groups 0000255 1,176 0 538 0 662 485 1,598
hom Homology Ontology 0000049 65 0 65 0 76 25 75
hp Human Phenotype Ontology 0011140 16,614 3,713 13,937 0 21,502 20,434 20,882
hpath Histopathology Ontology 2000191 1,047 0 940 0 34,230 670 1,083
hsapdv Human Developmental Stages 0000194 243 0 243 0 59 207 779
iao Information Artifact Ontology 0000030 185 0 176 0 0 0 247
icd10 International Classification of Diseases, 10th Revision C34 2,345 0 0 0 0 0 12,461
icd11 International Classification of Diseases, 11th Revision RA01.0 68,866 0 17,611 0 45,809 0 79,539
iceo Integrative and Conjugative Element Ontology 0000712_1 4,098 0 3,023 0 0 0 10,309
icepo Ion Channel Electrophysiology Ontology 0000002 51 0 51 0 42 0 43
ido Infectious Disease Ontology 0000504 253 0 253 0 0 0 290
idomal Malaria Ontology 0002350 1,457 13 1,453 0 577 28 2,110
ino Interaction Network Ontology 0000003 166 0 145 0 0 0 179
interpro InterPro IPR016380 40,124 0 0 0 0 35,090 9,523
itis Integrated Taxonomic Information System 589462 876,023 0 0 0 0 0 618,120
lbo Livestock Breed Ontology 0000487 1,105 0 19 0 41 0 1,104
lepao Lepidoptera Anatomy Ontology 0000005 132 0 2 0 20 0 136
lpt Livestock Product Trait Ontology 0000001 481 1 460 0 426 217 560
mat Minimal Anatomical Terminology 0000000 459 0 18 0 0 0 504
mco Microbial Conditions Ontology 0000858 839 0 36 0 0 0 858
mesh Medical Subject Headings C063233 348,973 0 30,042 0 617,854 15,832 41,079
mf Mental Functioning Ontology 0000091 2 0 1 0 0 0 9
mfoem Emotion Ontology 000204 213 1 187 0 0 0 215
mgi Mouse Genome Informatics 6017782 305,911 0 305,911 305,911 253,091 124,638 509,797
mi Molecular Interactions Controlled Vocabulary 0058 1,389 1 1,381 0 1,441 6 1,540
micro Ontology of Prokaryotic Phenotypic and Metabolic Characters 0002999 3,451 0 0 0 5,731 0 1,876
mirbase miRBase pre-miRNA MI0026471 38,589 0 38,589 38,589 1,441 9,110 69,253
miro Mosquito insecticide resistance 40000617 4,340 1 4,333 0 1,761 243 4,404
mmo Measurement method ontology 0000574 695 3 624 0 460 61 789
mmusdv Mouse Developmental Stages 0000066 105 0 104 0 108 72 294
mod Protein modification 01467 1,978 0 1,978 0 7,117 1,214 3,725
mondo Monarch Disease Ontology 0000001 22,335 0 15,485 0 0 98,591 40,382
mop Molecular Process Ontology 0000079 3,582 45 3,582 0 676 2 3,730
mp Mammalian Phenotype Ontology 0005452 13,569 663 13,441 0 27,140 643 17,185
mpath Mouse pathology ontology 728 841 1 756 0 335 0 949
mpio Minimum PDDI Information Ontology 0000004 10 0 10 0 0 0 14
mro MHC Restriction Ontology 0000634 51,173 0 23 0 0 0 55,996
ms Mass spectrometry ontology 1000560 2,937 0 2,910 0 231 1 4,849
msigdb Molecular Signatures Database M1 33,366 0 32,998 33,366 0 13,256 3,987,913
msio Metabolomics Standards Initiative Ontology 0000111 188 0 183 0 0 0 227
nbo Neuro Behavior Ontology 0000564 928 15 759 0 423 161 1,079
ncbigene Entrez Gene 100010 31,447,889 0 31,447,889 0 0 0 0
ncbitaxon NCBI Taxonomy 2170610 2,401,826 66,303 0 0 320,108 2,401,792 2,401,824
ncit NCI Thesaurus C138986 167,461 0 134,265 0 627,827 16,274 243,367
ncro Non-Coding RNA Ontology 0002927 2,543 0 29 0 0 2,473 4,601
nmr NMR-instrument specific component of metabolomics investigations 1000003 113 0 105 0 8 0 88
nomen A nomenclatural ontology for biological names 0000295 260 0 0 0 0 0 260
oarcs Ontology of Arthropod Circulatory Systems 0000029 307 0 307 0 92 50 564
oba Ontology of Biological Attributes 0000001 7,616 0 7,606 0 7,788 0 17,495
obcs Ontology of Biological and Clinical Statistics 0000121 245 0 244 0 0 0 298
obi Ontology for Biomedical Investigations 0400109 3,695 0 3,692 0 1,538 0 4,265
obib Ontology for Biobanking 0000389 727 0 727 0 0 0 763
oboinowl OBO in OWL hasDbXref 6 0 4 0 4 1 0
ogg The Ontology of Genes and Genomes 3000887619 69,639 0 98 0 0 88,376 69,731
ogms Ontology for General Medical Science 0000031 117 0 109 0 0 0 117
ogsf Ontology of Genetic Susceptibility Factor 0000025 59 0 21 0 0 0 79
ohmi Ontology of Host-Microbiome Interactions 0000460 455 0 453 0 0 0 993
ohpi Ontology of Host Pathogen Interactions 9001411 2,168 0 4 0 0 0 7,639
olatdv Medaka Developmental Stages 0000210 47 0 46 0 46 1 88
omiabis Ontologized MIABIS 0001079 126 0 122 0 0 0 139
omit Ontology for MicroRNA Target 0000069 89 0 0 0 0 0 113
omp Ontology of Microbial Phenotypes 0005067 2,006 2 1,804 0 517 187 2,506
omrse Ontology of Medically Related Social Entities 00000022 230 0 156 0 0 0 325
one Ontology for Nutritional Epidemiology 0001021 69 0 69 0 0 0 69
ontoavida Ontology for Avida digital evolution platform 00000001 670 0 670 0 0 0 668
opl Ontology for Parasite LifeCycle 0000319 315 0 315 0 0 11 650
ovae Ontology of Vaccine Adverse Events 0000609 627 0 578 0 0 0 1,241
pathbank PathBank SMP0000219 110,242 0 0 0 0 110,357 2,851,568
pato Phenotype And Trait Ontology 0001998 1,860 84 1,841 0 894 24 2,642
pco Population and Community Ontology 0000021 65 0 63 0 19 0 87
pdumdv Platynereis Developmental Stages 0001410 21 0 21 0 22 4 39
peco Plant Experimental Conditions Ontology 0007114 550 554 517 0 872 22 684
peff PSI Extended File Format 0001011 51 0 51 0 0 0 62
pfam Pfam PF11779 19,632 0 19,632 0 0 1 7,769
phipo Pathogen Host Interaction Phenotype Ontology 0000001 920 52 920 0 405 141 979
plana Planarian Anatomy and Schmidtea mediterranean Developmental Stage Ontology 0000001 646 0 646 0 625 386 2,841
planp Planarian Phenotype Ontology 0000001 673 0 646 0 658 0 919
po Plant Ontology 0009089 1,653 203 1,653 0 5,365 22 2,782
pombase PomBase SPCC13B11.01 5,010 0 12,818 12,818 2,442 0 36,384
poro Porifera Ontology 0000550 607 2 526 0 145 1 770
ppo Plant Phenology Ontology 0002058 254 0 229 0 0 0 410
pr Protein Ontology 000000024 226,461 63 226,420 0 747,673 196,805 647,409
pride PRIDE Controlled Vocabulary 1 607 0 342 0 54 1 676
psdo Performance Summary Display Ontology 0000055 74 0 74 0 0 0 85
pso Plant Stress Ontology 0000013 4 0 2 0 0 0 4
pubchem.compound PubChem CID 100101 111,284,458 0 0 0 0 130,019 0
pw Pathway ontology 0000423 2,600 210 2,381 0 1,957 0 3,258
rbo Radiation Biology Ontology 00000105 192 0 137 0 15 13 196
reactome Reactome R-BTA-418592 21,926 0 0 21,926 0 235 1,218,056
rex Physico-chemical process 0000512 552 0 350 0 152 118 730
rgd Rat Genome Database 7499841 66,910 0 55,487 66,910 130,975 97,055 119,188
rhea Rhea, the Annotated Reactions Database 12345 14,556 0 0 0 0 18,355 101,760
rnao RNA ontology 0000128 623 0 73 0 0 0 1,082
ro Relation Ontology 0002533 5 0 5 0 0 0 5
rs Rat Strain Ontology 0001807 5,020 15 75 0 8,269 0 6,860
rxno Name Reaction Ontology 0000253 653 4 653 0 374 64 1,264
scdo Sickle Cell Disease Ontology 0000728 1,266 0 1,258 0 1,989 523 3,880
schem Selventa Chemicals A0001 2,941 0 0 0 0 2,361 0
scomp Selventa Complexes C0001 135 0 0 0 3 97 3
sdis Selventa Diseases D0001 441 0 0 0 8 141 0
sep Sample processing and separation techniques 00073 214 0 214 0 0 0 251
sfam Selventa Families F0001 247 0 0 0 206 0 20
sibo Social Insect Behavior Ontology 0000509 481 0 124 0 43 0 1,102
sio Semanticscience Integrated Ontology 000912 1,572 0 0 0 0 0 1,922
so Sequence types and features ontology 0001157 2,386 122 2,381 0 4,283 147 3,116
spd Spider Ontology 0000001 757 0 757 0 0 88 1,191
swo Software ontology 0000144 13 0 13 0 0 0 0
symp Symptom Ontology 0019171 861 7 251 0 234 368 861
tads Tick Anatomy Ontology 0000547 628 0 627 0 92 0 947
tao Teleost Anatomy Ontology 0000086 2,951 45 1,606 0 1,888 369 4,721
taxrank Taxonomic rank vocabulary 0000001 61 0 2 0 8 28 60
tgma Mosquito gross anatomy ontology 0000984 1,864 0 1,862 0 5,178 0 2,732
to Plant Trait Ontology 0000630 1,606 23 1,505 0 1,622 369 2,283
trans Pathogen Transmission Ontology 0000024 32 0 32 0 3 0 31
tto Teleost taxonomy ontology 1058367 38,640 1 0 0 59,911 13,313 38,639
uberon Uber Anatomy Ontology 2005080 14,264 289 11,542 0 39,448 42,024 33,927
umls Unified Medical Language System Concept Unique Identifier C2584994 4,553,415 0 0 0 11,855,838 2,590,882 0
unimod Unimod protein modification database for mass spectrometry 1200 1,500 0 1,500 0 421 0 1,499
uniprot UniProt Protein P0DP23 567,483 0 0 567,483 0 0 567,483
upa Unipathway UCR00513 4,659 0 2,066 0 3,099 10,263 14,267
vario Variation Ontology 0376 495 0 491 0 55 69 517
vhog Vertebrate Homologous Organ Group Ontology 0000411 1,185 0 548 0 663 493 1,687
vsao Vertebrate Skeletal Anatomy Ontology 164 0 144 0 132 6 270
vt Vertebrate trait ontology 0000685 3,676 0 3,667 0 3,358 654 4,330
vto Vertebrate Taxonomy Ontology 9008500 107,005 0 0 0 103,878 121,508 106,998
wbbt C. elegans Gross Anatomy Ontology 0001290 6,762 420 6,479 0 2,435 79 15,092
wbls C. elegans development ontology 0000690 774 2 774 0 772 2 2,720
wbphenotype C. elegans phenotype 0000983 2,633 31 2,633 0 1,914 1 3,345
wikipathways WikiPathways WP732 1,722 0 0 1,722 0 537 69,404
xao Xenopus Anatomy Ontology 0004486 1,720 16 1,720 0 1,361 876 6,889
xco Experimental condition ontology 0000780 675 12 644 0 597 176 818
xlmod HUPO-PSI cross-linking and derivatization reagents controlled vocabulary 00050 1,101 0 1,101 0 684 0 2,971
xpo Xenopus Phenotype Ontology 0100002 20,061 0 20,061 0 10,621 1 34,360
zea Maize gross anatomy 179 0 136 0 51 0 217
zeco Zebrafish Experimental Conditions Ontology 0000171 161 0 119 0 7 0 171
zfa Zebrafish anatomy and development ontology 0005926 3,079 71 2,757 0 2,962 3,091 12,087
zfin Zebrafish Information Network Gene ZDB-GENE-041118-11 175,605 27,806 32,309 175,568 0 23,259 440,157
zfs Zebrafish developmental stages ontology 0000050 54 0 0 0 0 45 145
zp Zebrafish Phenotype Ontology 0019030 36,602 0 36,601 0 0 0 55,264