Summary

This page is a summary of the content in the Biolookup.

Prefix Name Example Names Alts Definitions Species
aeo Anatomical Entity Ontology 0001017 132 128 132 0
apo Yeast phenotypes 0000184 309 244 273 0
bspo Biological Spatial Ontology 0000029 139 0 107 0
ceph Cephalopod Ontology 0000109 321 0 244 0
cgnc Chicken Gene Nomenclature Consortium 10087 28,794 0 28,789 28,793
chebi Chemical Entities of Biological Interest 24867 137,592 18,444 8 0
chembl.compound ChEMBL ID CHEMBL465070 41,049 0 0 0
cl Cell Ontology 0000062 2,311 73 1,938 0
cmo Clinical measurement ontology 0001350 3,629 40 3,269 0
complexportal Complex Portal accession ID CPX-263 3,351 0 3,351 3,419
conso Curation of Neurodegeneration Supporting Ontology CONSO00010 368 0 368 0
cro Contributor Role Ontology 0000038 81 0 78 0
cteno Ctenophore Ontology 0000047 151 0 16 0
dc Disease Class 0000598 202 0 0 0
ddanat Dictyostelium discoideum anatomy 0000006 131 4 131 0
ddpheno Dictyostelium discoideum phenotype ontology 0001417 982 64 978 0
doid Human Disease Ontology 0110974 10,727 1,420 8,163 0
drugbank DrugBank DB14938 14,315 0 8,399 0
drugbank.salt DrugBank Salts DBSALT001211 2,505 0 0 0
drugcentral Drug Central 307 4,052 0 0 0
eccode Enzyme Nomenclature 1.1.1.1 6,960 0 0 0
eco Evidence ontology 0007807 1,788 46 1,788 0
efo Experimental Factor Ontology 0005147 9,875 55 8,738 0
exo Exposure ontology 0000078 149 1 146 0
fbbi Biological Imaging Methods Ontology 00000268 1 0 0 0
fbcv FlyBase Controlled Vocabulary 0000586 1,094 2 1,088 0
fix Physico-chemical methods and properties 0000390 1,163 0 0 0
fma Foundational Model of Anatomy 63189 78,977 0 1,118 0
fplx FamPlex GPIb_IX_V 705 0 424 0
fypo Fission Yeast Phenotype Ontology 0001707 7,391 111 7,389 0
geno Genotype Ontology 0000632 218 0 167 3
go Gene Ontology 0032571 44,085 3,206 44,085 0
gwascentral.phenotype GWAS Central Phenotype HGVPM623 4,320 0 37 0
gwascentral.study GWAS Central Study HGVST1828 4,320 0 37 0
hgnc HUGO Gene Nomenclature Committee 16793 42,514 0 42,514 42,514
hgnc.genefamily HGNC Family 2029 1,569 0 673 1,569
hog Homologous Organ Groups 0000255 1,176 0 538 0
hp Human Phenotype Ontology 0011140 15,816 3,682 13,056 0
hsapdv Human Developmental Stages 0000194 238 0 238 0
idomal Malaria Ontology 0002350 1,457 13 1,453 0
interpro Protein Domains IPR016380 38,549 0 0 0
itis Integrated Taxonomic Information System 589462 856,953 0 0 0
mesh Medical Subject Headings C063233 300,093 0 29,449 0
mgi Mouse Genome Informatics 6017782 304,226 0 304,226 304,226
mi Molecular Interactions Controlled Vocabulary 0058 1,435 2 1,430 0
mirbase miRBase pre-miRNA ID MI0026471 38,589 0 38,589 38,589
mirbase.mature miRBase mature miRNA ID MIMAT0046872 49,168 0 0 0
miro Mosquito insecticide resistance 40000617 4,340 1 4,333 0
mmo Measurement method ontology 0000574 743 6 672 0
mmusdv Mouse Developmental Stages 0000066 134 0 134 0
mod Protein modification 01467 1,978 0 1,978 0
mondo Monarch Disease Ontology 0000001 22,294 116 15,284 0
mop Molecular Process Ontology 0000079 3,579 45 3,579 0
mpath Mouse pathology ontology 728 841 1 756 0
ms Mass spectrometry ontology 1000560 2,742 0 2,719 0
msigdb Molecular Signatures Database NADELLA_PRKAR1A_TARGETS_DN 32,795 0 32,427 32,795
nbo Neuro Behavior Ontology 0000564 928 15 759 0
ncbigene Entrez Gene ID 100010 31,447,889 0 31,447,889 0
ncbitaxon NCBI organismal classification 2170610 2,308,106 61,373 0 0
ncit NCI Thesaurus C138986 158,568 0 125,256 0
npass Natural Product Activity and Species Source Database NPC139585 30,926 0 0 0
obi Ontology for Biomedical Investigations 0400109 2,927 0 2,924 0
olatdv Medaka Developmental Stages 0000210 47 0 46 0
omit Ontology for MicroRNA Target 0000069 89 0 0 0
omp Ontology of Microbial Phenotypes 0005067 1,997 2 1,802 0
omrse Ontology of Medically Related Social Entities 00000022 220 0 146 0
pathbank PathBank SMP0000219 110,242 0 0 0
pdumdv Platynereis Developmental Stages 0001410 21 0 21 0
peco Plant Environment Ontology 0007114 550 554 517 0
peff PSI Extended File Format 0001011 51 0 51 0
pfam Pfam ID PF11779 19,179 0 19,179 0
pid.pathway NCI Pathway Interaction Database: Pathway eff796f3-6195-11e5-8ac5-06603eb7f303 211 0 0 0
pr Protein Ontology 000000024 224,963 57 224,922 0
pubchem.compound PubChem CID 100101 108,823,481 0 0 0
pw Pathway ontology 0000423 2,600 210 2,381 0
reactome Reactome ID R-BTA-418592 20,567 0 0 21,195
rgd Rat Genome Database ID 7499841 65,147 0 65,147 65,147
rhea Rhea, the Annotated Reactions Database 12345 13,340 0 0 0
ro Relation Ontology RO_0002533 5 0 5 0
rs Rat Strain Ontology 0001807 4,835 15 74 0
rxno Name Reaction Ontology 0000253 614 4 614 0
sbo Systems Biology Ontology 0000485 651 0 651 0
sgd Saccharomyces Genome Database S000002493 6,600 0 6,600 6,600
so Sequence types and features ontology 0001157 2,339 122 2,334 0
spd Spider Ontology 0000001 757 0 757 0
symp Symptom Ontology 0019171 847 6 248 0
tads Tick Anatomy Ontology 0000547 628 0 627 0
tao Teleost Anatomy Ontology 0000086 2,951 45 1,606 0
tgma Mosquito gross anatomy ontology 0000984 1,864 0 1,862 0
trans Pathogen Transmission Ontology 0000024 25 0 25 0
uberon Uber Anatomy Ontology 2005080 14,084 307 11,378 0
umls Unified Medical Language System C2584994 4,412,440 0 0 0
uniprot UniProt protein ID P0DP23 564,278 0 0 565,254
upa Unipathway UCR00513 4,659 0 2,066 0
vario Variation Ontology 0376 495 0 491 0
vhog Vertebrate Homologous Organ Group Ontology 0000411 1,185 0 548 0
wikipathways WikiPathways ID WP732 1,730 0 0 1,789
xao Xenopus Anatomy Ontology 0004486 1,720 16 1,720 0
xco Experimental condition ontology 0000780 816 20 786 0
xlmod HUPO-PSI cross-linking and derivatization reagents controlled vocabulary 00050 1,101 0 1,101 0
zeco Zebrafish Experimental Conditions Ontology 0000171 161 0 119 0
zfa Zebrafish anatomy and development ontology 0005926 3,079 71 2,757 0
zfs Zebrafish developmental stages ontology 0000050 54 0 0 0